HERV genome browser

31156328

249250622

Insertions

LTR13 1185067-1186038 | TFBS: 3 | Strand: -

LTR13 1185067-1186038 BLAT view
TFBS: 3 Strand: - Mutations: 67
USF-1/1185185/1185435/89
EBF/1185565/1185829/103
CTCF/1185606/1185981/177

LTR13 1440345-1441337 | TFBS: 21 | Strand: -

LTR13 1440345-1441337 BLAT view
TFBS: 21 Strand: - Mutations: 52
HA-E2F1/1440189/1440399/338
c-Myc/1440205/1440415/292
GATA-1/1440242/1440692/218
CTCF/1440286/1440625/804
Rad21/1440332/1440572/141
ELF1_(SC-631)/1440332/1440608/101
CTCF_(SC-5916)/1440334/1440538/112
TCF12/1440352/1440568/293
Znf143_(16618-1-AP)/1440366/1440570/63
CTCF_(C-20)/1440371/1440571/414
USF-1/1440409/1440729/421
USF1_(SC-8983)/1440410/1440630/55
USF2/1440441/1440756/125
Pol2/1440441/1440891/182
EBF/1440729/1441208/143
PAX5-N19/1440752/1441012/301
Rad21/1440845/1441081/162
EBF1_(C-8)/1440847/1440939/97
CTCF_(C-20)/1440858/1441058/80
PAX5-C20/1440875/1441059/257
CTCF/1440912/1441207/274

LTR13 3537211-3538207 | TFBS: 6 | Strand: -

LTR13 3537211-3538207 BLAT view
TFBS: 6 Strand: - Mutations: 75
USF-1/3537332/3537582/99
CTCF/3537719/3538280/607
Rad21/3537737/3538017/210
SMC3_(ab9263)/3537787/3538041/370
CTCF_(SC-5916)/3537817/3538021/255
CTCF_(C-20)/3537874/3537937/237

LTR13 3718035-3718512 | TFBS: 4 | Strand: -

LTR13 3718035-3718512 BLAT view
TFBS: 4 Strand: - Mutations: 40
CTCF/3717981/3718454/359
EBF1_(C-8)/3718035/3718139/210
CTCF_(SC-5916)/3718072/3718276/155
Rad21/3718169/3718256/126

LTR13 3722496-3723494 | TFBS: 3 | Strand: -

LTR13 3722496-3723494 BLAT view
TFBS: 3 Strand: - Mutations: 60
USF-1/3722584/3722834/153
FOSL2/3722618/3722854/191
CTCF/3723011/3723381/244

LTR13 5953222-5954230 | TFBS: 5 | Strand: -

LTR13 5953222-5954230 BLAT view
TFBS: 5 Strand: - Mutations: 61
TAL1_(SC-12984)/5953239/5953489/104
FOSL1_(SC-183)/5953329/5953545/235
USF-1/5953457/5953533/407
CTCF/5953745/5954186/287
CTCF_(SC-5916)/5953819/5954023/83

LTR13 6422986-6423663 | TFBS: 8 | Strand: +

LTR13 6422986-6423663 BLAT view
TFBS: 8 Strand: + Mutations: 61
CTCF/6423065/6423472/508
SMC3_(ab9263)/6423156/6423403/362
Rad21/6423163/6423467/317
CTCF_(C-20)/6423179/6423379/99
RFX5_(N-494)/6423227/6423503/149
SETDB1/6423230/6423680/229
CTCF_(SC-5916)/6423237/6423344/327
USF-1/6423626/6423876/98

LTR13 6423688-6423967 | TFBS: 1 | Strand: +

LTR13 6423688-6423967 BLAT view
TFBS: 1 Strand: + Mutations: 61
USF-1/6423626/6423876/98

LTR13 28870292-28870399 | TFBS: 0 | Strand: -

LTR13 28870292-28870399 BLAT view
TFBS: 0 Strand: - Mutations: 129
0

LTR13 28871017-28871925 | TFBS: 3 | Strand: -

LTR13 28871017-28871925 BLAT view
TFBS: 3 Strand: - Mutations: 129
USF-1/28871047/28871277/426
CTCF/28871498/28871682/84
Egr-1/28871804/28872020/110

LTR13 32913798-32914796 | TFBS: 29 | Strand: +

LTR13 32913798-32914796 BLAT view
TFBS: 29 Strand: + Mutations: 133
CTCF/32913942/32914281/1000
ELF1_(SC-631)/32913967/32914207/169
PAX5-C20/32913968/32914192/401
GABP/32913970/32914240/29
SMC3_(ab9263)/32913971/32914215/532
Rad21/32913978/32914238/955
CTCF_(SC-5916)/32913996/32914212/409
IRF4_(M-17)/32913999/32914269/284
Znf143_(16618-1-AP)/32914005/32914209/76
Pol2-4H8/32914019/32914283/179
CTCF_(C-20)/32914038/32914165/677
HEY1/32914039/32914269/84
EBF1_(C-8)/32914056/32914292/119
TCF4/32914110/32914420/222
MafK_(SC-477)/32914354/32914598/234
MafK_(ab50322)/32914357/32914597/158
c-Jun/32914393/32914683/442
USF2/32914402/32914683/87
JunD/32914419/32914709/493
USF-1/32914423/32914673/347
SRF/32914465/32914629/94
FOSL2/32914493/32914687/923
Pol2/32914524/32914833/436
HEY1/32914544/32914774/184
YY1_(C-20)/32914718/32914982/149
CTCF/32914728/32915097/996
YY1/32914757/32914933/275
SMC3_(ab9263)/32914785/32915029/338
Rad21/32914788/32915024/162

LTR13 40550243-40551242 | TFBS: 8 | Strand: +

LTR13 40550243-40551242 BLAT view
TFBS: 8 Strand: + Mutations: 63
CTCF/40550328/40550721/1000
Rad21/40550424/40550667/411
SMC3_(ab9263)/40550431/40550679/305
Znf143_(16618-1-AP)/40550445/40550649/61
CTCF_(SC-5916)/40550446/40550662/281
PAX5-C20/40550479/40550703/215
EBF1_(C-8)/40550495/40550731/126
CTCF_(C-20)/40550500/40550613/440

LTR13 41582738-41583421 | TFBS: 1 | Strand: +

LTR13 41582738-41583421 BLAT view
TFBS: 1 Strand: + Mutations: 38
CTCF/41582683/41583039/68

LTR13 41583449-41583741 | TFBS: 0 | Strand: +

LTR13 41583449-41583741 BLAT view
TFBS: 0 Strand: + Mutations: 38
0

LTR13 43802379-43802608 | TFBS: 0 | Strand: -

LTR13 43802379-43802608 BLAT view
TFBS: 0 Strand: - Mutations: 70
0

LTR13 53826214-53827223 | TFBS: 0 | Strand: -

LTR13 53826214-53827223 BLAT view
TFBS: 0 Strand: - Mutations: 50
0

LTR13 53910120-53911132 | TFBS: 9 | Strand: +

LTR13 53910120-53911132 BLAT view
TFBS: 9 Strand: + Mutations: 110
CTCF/53910247/53910587/1000
YY1_(C-20)/53910302/53910580/130
SMC3_(ab9263)/53910308/53910556/283
Rad21/53910310/53910559/503
FOXA1_(C-20)/53910314/53910538/195
CTCF_(SC-5916)/53910320/53910539/331
Znf143_(16618-1-AP)/53910332/53910536/68
CTCFL_(SC-98982)/53910347/53910507/237
CTCF_(C-20)/53910373/53910481/494

LTR13 68523611-68524614 | TFBS: 1 | Strand: +

LTR13 68523611-68524614 BLAT view
TFBS: 1 Strand: + Mutations: 53
CTCF/68523280/68523882/452

LTR13 76308070-76309075 | TFBS: 2 | Strand: +

LTR13 76308070-76309075 BLAT view
TFBS: 2 Strand: + Mutations: 61
CTCF/76308121/76308601/263
Rad21/76308254/76308464/63

LTR13 94315828-94316790 | TFBS: 9 | Strand: -

LTR13 94315828-94316790 BLAT view
TFBS: 9 Strand: - Mutations: 52
KAP1/94316136/94316586/625
SETDB1/94316254/94316574/748
EBF1_(C-8)/94316261/94316497/123
CTCF/94316278/94316812/509
NRSF/94316296/94316563/52
SMC3_(ab9263)/94316319/94316624/192
Rad21/94316322/94316575/225
CTCF_(SC-5916)/94316356/94316560/154
CTCF_(C-20)/94316396/94316596/87

LTR13 104805265-104806272 | TFBS: 0 | Strand: -

LTR13 104805265-104806272 BLAT view
TFBS: 0 Strand: - Mutations: 71
0

LTR13 106304716-106304787 | TFBS: 0 | Strand: +

LTR13 106304716-106304787 BLAT view
TFBS: 0 Strand: + Mutations: 254
0

LTR13 146569840-146570451 | TFBS: 5 | Strand: -

LTR13 146569840-146570451 BLAT view
TFBS: 5 Strand: - Mutations: 62
CTCF/146569945/146570324/1000
c-Myc/146569963/146570173/249
Rad21/146570015/146570261/291
CTCF_(SC-5916)/146570036/146570252/227
CTCF_(C-20)/146570039/146570239/236

LTR13 156161955-156162903 | TFBS: 1 | Strand: +

LTR13 156161955-156162903 BLAT view
TFBS: 1 Strand: + Mutations: 44
USF-1/156162528/156162778/318

LTR13 194494102-194494181 | TFBS: 0 | Strand: -

LTR13 194494102-194494181 BLAT view
TFBS: 0 Strand: - Mutations: 162
0

LTR13 238078574-238079582 | TFBS: 0 | Strand: +

LTR13 238078574-238079582 BLAT view
TFBS: 0 Strand: + Mutations: 66
0

LTR13 238082291-238083299 | TFBS: 0 | Strand: -

LTR13 238082291-238083299 BLAT view
TFBS: 0 Strand: - Mutations: 62
0

TFBS+