Human LTR-retrotransposon family information

» TNT/TFBS+ in HERVs » Overall TFBS Statistics » HERV Families TFBS Statistics » TFBS Types Statistics

Please choose HERV family: select repeatERV3-16A3_I-int / 6465ERV3-16A3_LTR / 1080ERVL-B4-int / 3883ERVL-E-int / 8926ERVL-int / 790Harlequin-int / 545HERV-Fc1-int / 7HERV-Fc1_LTR1 / 17HERV-Fc1_LTR2 / 3HERV-Fc1_LTR3 / 5HERV-Fc2-int / 3HERV-Fc2_LTR / 4HERV15-int / 93HERV16-int / 1878HERV17-int / 877HERV1_I-int / 49HERV1_LTRa / 27HERV1_LTRb / 10HERV1_LTRc / 34HERV1_LTRd / 16HERV1_LTRe / 31HERV3-int / 306HERV30-int / 73HERV35I-int / 557HERV4_I-int / 324HERV9-int / 1035HERVE-int / 256HERVE_a-int / 194HERVFH19-int / 117HERVFH21-int / 118HERVH-int / 5909HERVH48-int / 118HERVI-int / 144HERVIP10F-int / 473HERVIP10FH-int / 681HERVK-int / 255HERVK11-int / 294HERVK11D-int / 46HERVK13-int / 68HERVK14-int / 402HERVK14C-int / 76HERVK22-int / 427HERVK3-int / 332HERVK9-int / 669HERVKC4-int / 46HERVL-int / 2276HERVL18-int / 542HERVL32-int / 115HERVL40-int / 1313HERVL66-int / 106HERVL74-int / 599HERVP71A-int / 251HERVS71-int / 175HUERS-P1-int / 505HUERS-P2-int / 254HUERS-P3-int / 720HUERS-P3b-int / 458LOR1-int / 1387LOR1a / 807LOR1b / 1103LTR1 / 1448LTR10A / 313LTR10B / 79LTR10B1 / 243LTR10C / 518LTR10D / 191LTR10E / 291LTR10F / 447LTR10G / 119LTR11 / 16LTR12 / 774LTR12B / 211LTR12C / 2740LTR12D / 489LTR12E / 115LTR12F / 635LTR12_ / 555LTR13 / 491LTR13A / 188LTR13_ / 44LTR14 / 95LTR14A / 131LTR14B / 363LTR14C / 137LTR15 / 266LTR16A / 6965LTR16A1 / 2808LTR16A2 / 1842LTR16B / 692LTR16B1 / 1192LTR16B2 / 1620LTR16C / 6631LTR16D / 1108LTR16D1 / 205LTR16D2 / 281LTR16E1 / 2475LTR16E2 / 2314LTR17 / 839LTR18A / 259LTR18B / 401LTR19-int / 201LTR19A / 448LTR19B / 281LTR19C / 226LTR1B / 1174LTR1C / 248LTR1D / 994LTR2 / 887LTR21A / 93LTR21B / 60LTR22 / 103LTR22A / 189LTR22B / 233LTR22C / 394LTR23 / 849LTR23-int / 279LTR24 / 308LTR24B / 468LTR24C / 382LTR25 / 281LTR25-int / 589LTR26 / 616LTR26B / 459LTR26E / 303LTR27 / 412LTR27B / 573LTR28 / 515LTR29 / 702LTR2B / 326LTR2C / 295LTR3 / 93LTR30 / 145LTR31 / 241LTR32 / 1309LTR33 / 9260LTR33A / 2031LTR33A_ / 1659LTR33B / 1588LTR33C / 926LTR34 / 386LTR35 / 118LTR35A / 90LTR35B / 207LTR36 / 489LTR37A / 1967LTR37B / 2034LTR38 / 310LTR38-int / 123LTR38B / 229LTR38C / 124LTR39 / 1268LTR39-int / 162LTR3A / 163LTR3B / 92LTR3B_ / 262LTR4 / 101LTR40a / 1965LTR40A1 / 568LTR40b / 1148LTR40c / 602LTR41 / 1736LTR41B / 993LTR42 / 309LTR43 / 401LTR43-int / 150LTR43B / 231LTR44 / 218LTR45 / 177LTR45B / 444LTR45C / 425LTR46 / 259LTR46-int / 77LTR47A / 906LTR47B / 413LTR48 / 975LTR48B / 1021LTR49 / 1443LTR49-int / 2178LTR5 / 20LTR50 / 2620LTR51 / 418LTR52 / 1081LTR52-int / 268LTR53 / 667LTR54 / 1121LTR54B / 846LTR55 / 407LTR56 / 980LTR57 / 267LTR57-int / 437LTR58 / 76LTR59 / 122LTR5A / 265LTR5B / 431LTR5_Hs / 645LTR60 / 274LTR61 / 193LTR62 / 315LTR64 / 372LTR65 / 459LTR66 / 377LTR67B / 3717LTR68 / 355LTR69 / 142LTR6A / 288LTR6B / 154LTR7 / 2344LTR70 / 144LTR71A / 166LTR71B / 238LTR72 / 153LTR72B / 170LTR73 / 217LTR75 / 291LTR75B / 206LTR75_1 / 128LTR76 / 188LTR77 / 148LTR78 / 4819LTR78B / 3281LTR79 / 4053LTR7A / 15LTR7B / 848LTR7C / 318LTR7Y / 249LTR8 / 3543LTR80A / 393LTR80B / 511LTR81 / 324LTR81A / 971LTR81AB / 273LTR81B / 1159LTR81C / 727LTR82A / 1042LTR82B / 1158LTR83 / 731LTR84a / 664LTR84b / 1297LTR85a / 1903LTR85b / 1175LTR85c / 1186LTR86A1 / 525LTR86A2 / 313LTR86B1 / 298LTR86B2 / 269LTR86C / 285LTR87 / 699LTR88a / 917LTR88b / 1645LTR88c / 1043LTR89 / 1155LTR8A / 2836LTR9 / 2011LTR90A / 407LTR90B / 538LTR9B / 758MamGyp-int / 342MamGypLTR1a / 1091MamGypLTR1b / 1214MamGypLTR1c / 1139MamGypLTR1d / 751MamGypLTR2b / 892MamGypLTR2c / 1054MamGypLTR3 / 955MamRep1527 / 1261MER101 / 367MER101-int / 1263MER101B / 259MER110 / 781MER110-int / 388MER110A / 636MER11A / 964MER11B / 547MER11C / 866MER11D / 260MER21-int / 1092MER21A / 1921MER21B / 2797MER21C / 5501MER31-int / 2057MER31A / 1351MER31B / 1487MER34 / 1328MER34-int / 396MER34A / 1477MER34A1 / 768MER34B / 669MER34B-int / 676MER34C / 184MER34C2 / 562MER34C_ / 655MER34D / 250MER39 / 3336MER39B / 1179MER4-int / 2923MER41-int / 1717MER41A / 2550MER41B / 2852MER41C / 844MER41D / 475MER41E / 359MER41G / 113MER48 / 193MER49 / 1369MER4A / 1131MER4A1 / 2236MER4A1_ / 402MER4B / 1732MER4B-int / 1469MER4C / 1256MER4D / 1332MER4D0 / 433MER4D1 / 1521MER4E / 737MER4E1 / 1049MER50 / 2572MER50-int / 515MER50B / 692MER50C / 118MER51-int / 558MER51A / 955MER51B / 716MER51C / 179MER51D / 155MER51E / 249MER52-int / 492MER52A / 1827MER52C / 375MER52D / 653MER54A / 678MER54B / 434MER57-int / 1280MER57A-int / 1898MER57A1 / 1061MER57B1 / 1013MER57B2 / 1104MER57C1 / 190MER57C2 / 467MER57D / 458MER57E1 / 501MER57E2 / 76MER57E3 / 244MER57F / 431MER61-int / 1153MER61A / 812MER61B / 431MER61C / 314MER61D / 272MER61E / 335MER61F / 161MER65-int / 959MER65A / 1413MER65B / 206MER65C / 683MER65D / 474MER66-int / 747MER66A / 328MER66B / 1435MER66C / 589MER66D / 243MER67A / 479MER67B / 484MER67C / 1642MER67D / 1013MER68 / 1500MER68-int / 376MER68B / 450MER70-int / 258MER70A / 535MER70B / 479MER70C / 275MER72 / 781MER72B / 181MER73 / 280MER74A / 1582MER74B / 933MER74C / 233MER76 / 718MER76-int / 150MER77 / 1295MER77B / 1258MER83 / 465MER83A-int / 107MER83B / 144MER83B-int / 260MER83C / 154MER84 / 363MER84-int / 145MER87 / 227MER87B / 244MER88 / 113MER89 / 1391MER89-int / 702MER90 / 702MER90a / 1247MER92A / 152MER92B / 893MER92C / 332MER95 / 156MER9a1 / 343MER9a2 / 309MER9a3 / 580MER9B / 39MLT-int / 353MLT1-int / 227MLT1A / 9070MLT1A-int / 450MLT1A0 / 20640MLT1A0-int / 926MLT1A1 / 6766MLT1A1-int / 455MLT1B / 18002MLT1B-int / 556MLT1C / 19823MLT1C-int / 461MLT1D / 20741MLT1D-int / 639MLT1E / 908MLT1E-int / 18MLT1E1 / 1043MLT1E1-int / 45MLT1E1A / 3362MLT1E1A-int / 88MLT1E2 / 3996MLT1E2-int / 133MLT1E3 / 2038MLT1E3-int / 83MLT1F / 4297MLT1F-int / 512MLT1F1 / 3279MLT1F1-int / 161MLT1F2 / 6036MLT1F2-int / 300MLT1G / 2854MLT1G-int / 181MLT1G1 / 3592MLT1G1-int / 307MLT1G3 / 2709MLT1G3-int / 240MLT1H / 10092MLT1H-int / 803MLT1H1 / 3640MLT1H1-int / 430MLT1H2 / 4714MLT1H2-int / 350MLT1I / 11089MLT1I-int / 800MLT1J / 15270MLT1J-int / 1443MLT1J1 / 4925MLT1J1-int / 496MLT1J2 / 6925MLT1J2-int / 593MLT1K / 18172MLT1K-int / 199MLT1L / 12074MLT1L-int / 108MLT1M / 2956MLT1M-int / 1MLT1N2 / 5884MLT1N2-int / 76MLT2A1 / 3780MLT2A2 / 3897MLT2B1 / 4480MLT2B2 / 2209MLT2B3 / 3313MLT2B4 / 4587MLT2B5 / 330MLT2C1 / 2620MLT2C2 / 1323MLT2D / 4525MLT2E / 391MLT2F / 1917MST-int / 359MSTA / 19782MSTA-int / 3159MSTB / 8562MSTB-int / 877MSTB1 / 5073MSTB1-int / 258MSTB2 / 1603MSTB2-int / 91MSTC / 3169MSTC-int / 203MSTD / 7665MSTD-int / 738PABL_A / 523PABL_A-int / 421PABL_B / 377PABL_B-int / 233PRIMA4-int / 696PRIMA41-int / 440PRIMA4_LTR / 360PRIMAX-int / 373PrimLTR79 / 141THE1-int / 653THE1A / 4233THE1A-int / 1464THE1B / 22433THE1B-int / 4230THE1C / 9873THE1C-int / 1817THE1D / 12642THE1D-int / 1878

Current HERV family: HERV-Fc1_LTR3

Divergence Range	TFBS+ in range	TFBS in range (TNT)	HERVs in Range (ALL)	TNT / ALL	TFBS+ / ALL
50	3	19	3	6.3333	1.0000
60	1	3	1	3.0000	1.0000
70	1	4	1	4.0000	1.0000

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