Human LTR-retrotransposon genome browser

» Total HERV Statistics » HERV Genome Browser » TFBS dependence on HERV Divergence

» TNT/TFBS+ in HERVs » Overall TFBS Statistics » HERV Families TFBS Statistics » TFBS Types Statistics

Choose repeat family:
Choose chromosome:
If you have specific coordinate input it here: or leave field blank.
31156328
0
249250622
Insertions
LTR22C 388959-389435 | TFBS: 0 | Strand: -
LTR22C 388959-389435 BLAT view
TFBS: 0   Strand: -   Mutations: 215
0
LTR22C 601022-601498 | TFBS: 1 | Strand: +
LTR22C 601022-601498 BLAT view
TFBS: 1   Strand: +   Mutations: 218
FOXA1_(C-20)/601020/601280/110
LTR22C 12714626-12715098 | TFBS: 9 | Strand: +
LTR22C 12714626-12715098 BLAT view
TFBS: 9   Strand: +   Mutations: 201
TCF4/12714639/12715223/266
FOXA2_(SC-6554)/12714682/12714989/830
FOXA1_(C-20)/12714690/12715007/828
HNF4G_(SC-6558)/12714698/12714948/311
p300/12714709/12714993/171
HDAC2_(SC-6296)/12714727/12714977/680
BHLHE40/12714738/12714928/490
USF-1/12714754/12714934/67
FOXA1_(SC-101058)/12714762/12714983/684
LTR22C 51764648-51765071 | TFBS: 1 | Strand: +
LTR22C 51764648-51765071 BLAT view
TFBS: 1   Strand: +   Mutations: 169
Rad21/51764995/51765231/120
LTR22C 80715452-80715933 | TFBS: 1 | Strand: -
LTR22C 80715452-80715933 BLAT view
TFBS: 1   Strand: -   Mutations: 186
SETDB1/80715398/80715848/348
LTR22C 156153673-156153788 | TFBS: 0 | Strand: -
LTR22C 156153673-156153788 BLAT view
TFBS: 0   Strand: -   Mutations: 240
0
LTR22C 156154094-156154415 | TFBS: 9 | Strand: -
LTR22C 156154094-156154415 BLAT view
TFBS: 9   Strand: -   Mutations: 134
TCF4/156153998/156154382/503
SP1/156154054/156154334/690
HDAC2_(SC-6296)/156154065/156154315/703
FOXA1_(SC-101058)/156154089/156154302/561
p300/156154093/156154307/583
FOXA2_(SC-6554)/156154094/156154310/430
FOXA1_(C-20)/156154097/156154317/492
HNF4A_(H-171)/156154157/156154315/647
HNF4G_(SC-6558)/156154185/156154250/730
LTR22C 156159036-156159504 | TFBS: 0 | Strand: -
LTR22C 156159036-156159504 BLAT view
TFBS: 0   Strand: -   Mutations: 204
0
LTR22C 158917349-158917842 | TFBS: 0 | Strand: -
LTR22C 158917349-158917842 BLAT view
TFBS: 0   Strand: -   Mutations: 210
0
LTR22C 158928945-158929434 | TFBS: 0 | Strand: -
LTR22C 158928945-158929434 BLAT view
TFBS: 0   Strand: -   Mutations: 215
0
LTR22C 181129417-181129911 | TFBS: 5 | Strand: +
LTR22C 181129417-181129911 BLAT view
TFBS: 5   Strand: +   Mutations: 170
TAL1_(SC-12984)/181129508/181129758/112
FOXA1_(C-20)/181129508/181129768/105
GATA2_(CG2-96)/181129515/181129745/136
Egr-1/181129539/181129755/180
FOXA2_(SC-6554)/181129542/181129766/117
LTR22C 185550202-185550656 | TFBS: 1 | Strand: -
LTR22C 185550202-185550656 BLAT view
TFBS: 1   Strand: -   Mutations: 158
FOXA2_(SC-6554)/185550325/185550549/105
LTR22C 185554888-185555370 | TFBS: 10 | Strand: -
LTR22C 185554888-185555370 BLAT view
TFBS: 10   Strand: -   Mutations: 189
TCF4/185554929/185555313/157
GR/185554967/185555237/197
USF-1/185554978/185555281/114
HDAC2_(SC-6296)/185554979/185555229/411
FOXA2_(SC-6554)/185555005/185555280/482
FOXA1_(C-20)/185555006/185555303/781
HNF4G_(SC-6558)/185555014/185555264/261
p300/185555020/185555304/282
HNF4A_(H-171)/185555025/185555265/294
FOXA1_(SC-101058)/185555032/185555243/634
LTR22C 193161753-193162216 | TFBS: 3 | Strand: -
LTR22C 193161753-193162216 BLAT view
TFBS: 3   Strand: -   Mutations: 179
FOXA1_(SC-101058)/193161817/193162087/151
FOXA2_(SC-6554)/193161830/193162054/109
FOXA1_(C-20)/193161836/193162096/96
LTR22C 193206485-193206997 | TFBS: 0 | Strand: +
LTR22C 193206485-193206997 BLAT view
TFBS: 0   Strand: +   Mutations: 225
0
LTR22C 196070319-196070721 | TFBS: 1 | Strand: -
LTR22C 196070319-196070721 BLAT view
TFBS: 1   Strand: -   Mutations: 201
KAP1/196070198/196070648/592
LTR22C 225409361-225409831 | TFBS: 1 | Strand: +
LTR22C 225409361-225409831 BLAT view
TFBS: 1   Strand: +   Mutations: 219
FOXA1_(C-20)/225409439/225409699/134
LTR22C 225416499-225416973 | TFBS: 12 | Strand: +
LTR22C 225416499-225416973 BLAT view
TFBS: 12   Strand: +   Mutations: 203
TCF4/225416536/225416912/996
FOXA1_(C-20)/225416554/225416925/1000
FOXA1_(SC-101058)/225416560/225416929/1000
FOXA2_(SC-6554)/225416572/225416902/1000
RXRA/225416573/225416833/337
HNF4A/225416590/225416846/372
HNF4G_(SC-6558)/225416590/225416840/876
HNF4A_(H-171)/225416621/225416739/600
SP1/225416631/225416719/739
HDAC2_(SC-6296)/225416637/225416839/1000
KAP1/225416641/225417091/720
p300/225416688/225416762/412
TFBS+
LTR22C 601022-601498 | TFBS: 1 | Strand: +
LTR22C 601022-601498 BLAT view
TFBS: 1   Strand: +   Mutations: 218
FOXA1_(C-20)/601020/601280/110
LTR22C 12714626-12715098 | TFBS: 9 | Strand: +
LTR22C 12714626-12715098 BLAT view
TFBS: 9   Strand: +   Mutations: 201
TCF4/12714639/12715223/266
FOXA2_(SC-6554)/12714682/12714989/830
FOXA1_(C-20)/12714690/12715007/828
HNF4G_(SC-6558)/12714698/12714948/311
p300/12714709/12714993/171
HDAC2_(SC-6296)/12714727/12714977/680
BHLHE40/12714738/12714928/490
USF-1/12714754/12714934/67
FOXA1_(SC-101058)/12714762/12714983/684
LTR22C 51764648-51765071 | TFBS: 1 | Strand: +
LTR22C 51764648-51765071 BLAT view
TFBS: 1   Strand: +   Mutations: 169
Rad21/51764995/51765231/120
LTR22C 80715452-80715933 | TFBS: 1 | Strand: -
LTR22C 80715452-80715933 BLAT view
TFBS: 1   Strand: -   Mutations: 186
SETDB1/80715398/80715848/348
LTR22C 156154094-156154415 | TFBS: 9 | Strand: -
LTR22C 156154094-156154415 BLAT view
TFBS: 9   Strand: -   Mutations: 134
TCF4/156153998/156154382/503
SP1/156154054/156154334/690
HDAC2_(SC-6296)/156154065/156154315/703
FOXA1_(SC-101058)/156154089/156154302/561
p300/156154093/156154307/583
FOXA2_(SC-6554)/156154094/156154310/430
FOXA1_(C-20)/156154097/156154317/492
HNF4A_(H-171)/156154157/156154315/647
HNF4G_(SC-6558)/156154185/156154250/730
LTR22C 181129417-181129911 | TFBS: 5 | Strand: +
LTR22C 181129417-181129911 BLAT view
TFBS: 5   Strand: +   Mutations: 170
TAL1_(SC-12984)/181129508/181129758/112
FOXA1_(C-20)/181129508/181129768/105
GATA2_(CG2-96)/181129515/181129745/136
Egr-1/181129539/181129755/180
FOXA2_(SC-6554)/181129542/181129766/117
LTR22C 185550202-185550656 | TFBS: 1 | Strand: -
LTR22C 185550202-185550656 BLAT view
TFBS: 1   Strand: -   Mutations: 158
FOXA2_(SC-6554)/185550325/185550549/105
LTR22C 185554888-185555370 | TFBS: 10 | Strand: -
LTR22C 185554888-185555370 BLAT view
TFBS: 10   Strand: -   Mutations: 189
TCF4/185554929/185555313/157
GR/185554967/185555237/197
USF-1/185554978/185555281/114
HDAC2_(SC-6296)/185554979/185555229/411
FOXA2_(SC-6554)/185555005/185555280/482
FOXA1_(C-20)/185555006/185555303/781
HNF4G_(SC-6558)/185555014/185555264/261
p300/185555020/185555304/282
HNF4A_(H-171)/185555025/185555265/294
FOXA1_(SC-101058)/185555032/185555243/634
LTR22C 193161753-193162216 | TFBS: 3 | Strand: -
LTR22C 193161753-193162216 BLAT view
TFBS: 3   Strand: -   Mutations: 179
FOXA1_(SC-101058)/193161817/193162087/151
FOXA2_(SC-6554)/193161830/193162054/109
FOXA1_(C-20)/193161836/193162096/96
LTR22C 196070319-196070721 | TFBS: 1 | Strand: -
LTR22C 196070319-196070721 BLAT view
TFBS: 1   Strand: -   Mutations: 201
KAP1/196070198/196070648/592
LTR22C 225409361-225409831 | TFBS: 1 | Strand: +
LTR22C 225409361-225409831 BLAT view
TFBS: 1   Strand: +   Mutations: 219
FOXA1_(C-20)/225409439/225409699/134
LTR22C 225416499-225416973 | TFBS: 12 | Strand: +
LTR22C 225416499-225416973 BLAT view
TFBS: 12   Strand: +   Mutations: 203
TCF4/225416536/225416912/996
FOXA1_(C-20)/225416554/225416925/1000
FOXA1_(SC-101058)/225416560/225416929/1000
FOXA2_(SC-6554)/225416572/225416902/1000
RXRA/225416573/225416833/337
HNF4A/225416590/225416846/372
HNF4G_(SC-6558)/225416590/225416840/876
HNF4A_(H-171)/225416621/225416739/600
SP1/225416631/225416719/739
HDAC2_(SC-6296)/225416637/225416839/1000
KAP1/225416641/225417091/720
p300/225416688/225416762/412

refGene Track (genes view): On Off  

Show list of browser HERVs:

© 2012 Postparser.net | Andrew Garazha & Anton Buzdin | Cellgenetics.ru